GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
|
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| THCA | cis | rs965469 | 1 | rs6051715 | chr20:3266548 | ITPA | chr20:3190056-3204504:+ | -0.24 | -5.92 | 6.32E-9 | IFN-related cytopenia |
| THCA | cis | rs965469 | 1 | rs6051716 | chr20:3267736 | ITPA | chr20:3190056-3204504:+ | -0.25 | -6.07 | 2.65E-9 | IFN-related cytopenia |
| THCA | cis | rs965469 | 1 | rs6051718 | chr20:3270370 | ITPA | chr20:3190056-3204504:+ | -0.25 | -6.07 | 2.6E-9 | IFN-related cytopenia |
| THCA | cis | rs965469 | 1 | rs6051722 | chr20:3274435 | ITPA | chr20:3190056-3204504:+ | -0.24 | -5.87 | 8.02E-9 | IFN-related cytopenia |
| THCA | cis | rs965469 | 1 | rs6051723 | chr20:3278512 | ITPA | chr20:3190056-3204504:+ | -0.25 | -6.07 | 2.6E-9 | IFN-related cytopenia |
| THCA | cis | rs965469 | 1 | rs6051724 | chr20:3279338 | ITPA | chr20:3190056-3204504:+ | -0.24 | -5.92 | 6.32E-9 | IFN-related cytopenia |
| THCA | cis | rs965469 | 1 | rs6051732 | chr20:3294182 | ITPA | chr20:3190056-3204504:+ | -0.25 | -6.07 | 2.6E-9 | IFN-related cytopenia |
| THCA | cis | rs965469 | 1 | rs6051736 | chr20:3296898 | ITPA | chr20:3190056-3204504:+ | -0.24 | -5.87 | 8.02E-9 | IFN-related cytopenia |
| THCA | cis | rs965469 | 1 | rs6051737 | chr20:3296992 | ITPA | chr20:3190056-3204504:+ | -0.24 | -5.92 | 6.32E-9 | IFN-related cytopenia |
| THCA | cis | rs965469 | 1 | rs6051745 | chr20:3307243 | ITPA | chr20:3190056-3204504:+ | -0.24 | -5.87 | 8.02E-9 | IFN-related cytopenia |
| THCA | cis | rs965469 | 1 | rs6051747 | chr20:3307945 | ITPA | chr20:3190056-3204504:+ | -0.24 | -5.92 | 6.32E-9 | IFN-related cytopenia |
| THCA | cis | rs965469 | 1 | rs6051751 | chr20:3310049 | ITPA | chr20:3190056-3204504:+ | -0.24 | -5.87 | 8.02E-9 | IFN-related cytopenia |
| THCA | cis | rs965469 | 1 | rs6051753 | chr20:3315513 | ITPA | chr20:3190056-3204504:+ | -0.24 | -5.85 | 9.19E-9 | IFN-related cytopenia |
| THCA | cis | rs965469 | 1 | rs6051762 | chr20:3321590 | ITPA | chr20:3190056-3204504:+ | -0.24 | -5.79 | 1.28E-8 | IFN-related cytopenia |
| THCA | cis | rs965469 | 1 | rs6051763 | chr20:3321616 | ITPA | chr20:3190056-3204504:+ | -0.23 | -5.6 | 3.57E-8 | IFN-related cytopenia |